IL_8OVE_078

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGU*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_078 not in the Motif Atlas

Geometric match to IL_4J50_001

Geometric discrepancy: 0.1718

The information below is about IL_4J50_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

8OVE|1|AA|A|2041
8OVE|1|AA|G|2042
8OVE|1|AA|U|2043
*
8OVE|1|AA|G|2056
8OVE|1|AA|G|2057
8OVE|1|AA|U|2058

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain AI

40S ribosomal protein S15, putative

Chain AM

40S ribosomal protein S18, putative

Chain AO

Ribosomal protein S19, putative