IL_8OVE_087

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AC*GAU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_087 not in the Motif Atlas

Geometric match to IL_4UYK_001

Geometric discrepancy: 0.2381

The information below is about IL_4UYK_001

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

8OVE|1|AA|A|2163
8OVE|1|AA|C|2164
*
8OVE|1|AA|G|2209
8OVE|1|AA|A|2210
8OVE|1|AA|U|2211

Current chains

Chain AA

SSU rRNA

Nearby chains

Chain A5

40S ribosomal protein S8

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BY

Ribosomal protein L24