IL_8OVE_089
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AUC*GUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_089 not in the Motif Atlas
- Geometric match to IL_5ZTM_002
- Geometric discrepancy: 0.0966
- The information below is about IL_5ZTM_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 95
Unit IDs
8OVE|1|AA|A|2170
8OVE|1|AA|U|2171
8OVE|1|AA|C|2172
*
8OVE|1|AA|G|2202
8OVE|1|AA|U|2203
8OVE|1|AA|U|2204
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A3
- 40S ribosomal protein S6
- Chain A5
- 40S ribosomal protein S8
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BY
- Ribosomal protein L24
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