IL_8OVE_100

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGCUG*CUC

Length

8 nucleotides

Bulged bases

8OVE|1|BA|G|182, 8OVE|1|BA|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_100 not in the Motif Atlas

Geometric match to IL_4V88_426

Geometric discrepancy: 0.2261

The information below is about IL_4V88_426

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8OVE|1|BA|G|181
8OVE|1|BA|G|182
8OVE|1|BA|C|183
8OVE|1|BA|U|184
8OVE|1|BA|G|185
*
8OVE|1|BA|C|313
8OVE|1|BA|U|314
8OVE|1|BA|C|315

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain BN

60S ribosomal protein L13

Chain BQ

Ribosomal protein L15

Chain Bk

60S ribosomal protein L35, putative