IL_8OVE_101

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCA*UACGC

Length

8 nucleotides

Bulged bases

8OVE|1|BA|A|307, 8OVE|1|BA|C|308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_101 not in the Motif Atlas

Geometric match to IL_4WF9_034

Geometric discrepancy: 0.205

The information below is about IL_4WF9_034

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8OVE|1|BA|G|188
8OVE|1|BA|C|189
8OVE|1|BA|A|190
*
8OVE|1|BA|U|306
8OVE|1|BA|A|307
8OVE|1|BA|C|308
8OVE|1|BA|G|309
8OVE|1|BA|C|310

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain BN

60S ribosomal protein L13

Chain Bk

60S ribosomal protein L35, putative