IL_8OVE_108

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

8OVE|1|BA|A|408

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_108 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.1237

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8OVE|1|BA|G|407
8OVE|1|BA|A|408
8OVE|1|BA|C|409
*
8OVE|1|BC|G|24
8OVE|1|BC|C|25

Current chains

Chain BA

LUS_alpha rRNA

Chain BC

5.8S rRNA

Nearby chains

Chain BZ

60S ribosomal protein L26, putative

Chain Br

60S ribosomal protein L4