IL_8OVE_109
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUU*AC
- Length
- 5 nucleotides
- Bulged bases
- 8OVE|1|BA|U|439
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_109 not in the Motif Atlas
- Geometric match to IL_2R8S_004
- Geometric discrepancy: 0.2986
- The information below is about IL_2R8S_004
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 170
Unit IDs
8OVE|1|BA|G|438
8OVE|1|BA|U|439
8OVE|1|BA|U|440
*
8OVE|1|BC|A|19
8OVE|1|BC|C|20
Current chains
- Chain BA
- LUS_alpha rRNA
- Chain BC
- 5.8S rRNA
Nearby chains
- Chain BZ
- 60S ribosomal protein L26, putative
- Chain Bq
- 60S ribosomal protein L39, putative
- Chain Br
- 60S ribosomal protein L4
Coloring options: