IL_8OVE_112
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUGAAAU*AUGGAUG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_112 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0991
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8OVE|1|BA|C|475
8OVE|1|BA|U|476
8OVE|1|BA|G|477
8OVE|1|BA|A|478
8OVE|1|BA|A|479
8OVE|1|BA|A|480
8OVE|1|BA|U|481
*
8OVE|1|BC|A|12
8OVE|1|BC|U|13
8OVE|1|BC|G|14
8OVE|1|BC|G|15
8OVE|1|BC|A|16
8OVE|1|BC|U|17
8OVE|1|BC|G|18
Current chains
- Chain BA
- LUS_alpha rRNA
- Chain BC
- 5.8S rRNA
Nearby chains
- Chain BR
- 60S ribosomal protein L17, putative
- Chain Bi
- 60S ribosomal protein L32, putative
- Chain Br
- 60S ribosomal protein L4
Coloring options: