IL_8OVE_119

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AA*UCAU

Length

6 nucleotides

Bulged bases

8OVE|1|BA|C|610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_119 not in the Motif Atlas

Geometric match to IL_5WLH_001

Geometric discrepancy: 0.1006

The information below is about IL_5WLH_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.4

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8OVE|1|BA|A|536
8OVE|1|BA|A|537
*
8OVE|1|BA|U|609
8OVE|1|BA|C|610
8OVE|1|BA|A|611
8OVE|1|BA|U|612

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain Bl

60S ribosomal protein L35A, putative

Chain Br

60S ribosomal protein L4

Chain Bv

60S ribosomal protein L6, putative