IL_8OVE_141

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAUG*C(PSU)C

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_141 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.3262

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8OVE|1|BA|G|989
8OVE|1|BA|A|990
8OVE|1|BA|U|991
8OVE|1|BA|G|992
*
8OVE|1|BA|C|1008
8OVE|1|BA|PSU|1009
8OVE|1|BA|C|1010

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain Bn

Ribosomal protein L37