IL_8OVE_148
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGGUAA*UAAA(OMU)G
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_148 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.2127
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OVE|1|BA|C|1117
8OVE|1|BA|G|1118
8OVE|1|BA|G|1119
8OVE|1|BA|U|1120
8OVE|1|BA|A|1121
8OVE|1|BA|A|1122
*
8OVE|1|BA|U|1177
8OVE|1|BA|A|1178
8OVE|1|BA|A|1179
8OVE|1|BA|A|1180
8OVE|1|BA|OMU|1181
8OVE|1|BA|G|1182
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- 5S ribosomal RNA; 5S rRNA
- Chain BK
- 60S ribosomal protein L10, putative
- Chain BU
- 60S ribosomal protein L21E, putative
- Chain Bu
- 60S ribosomal protein L5, putative
- Chain Bw
- 60S ribosomal protein L7, putative
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