IL_8OVE_152

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_152 not in the Motif Atlas

Geometric match to IL_5TBW_042

Geometric discrepancy: 0.1136

The information below is about IL_5TBW_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8OVE|1|BA|A|1134
8OVE|1|BA|G|1135
8OVE|1|BA|A|1136
*
8OVE|1|BA|U|1164
8OVE|1|BA|A|1165
8OVE|1|BA|U|1166

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain BK

60S ribosomal protein L10, putative

Chain Bu

60S ribosomal protein L5, putative