IL_8OVE_153

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

8OVE|1|BA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_153 not in the Motif Atlas

Geometric match to IL_4P43_002

Geometric discrepancy: 0.1731

The information below is about IL_4P43_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8OVE|1|BA|U|1200
8OVE|1|BA|A|1201
8OVE|1|BA|G|1202
*
8OVE|1|BA|C|1212
8OVE|1|BA|A|1213

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain BU

60S ribosomal protein L21E, putative

Chain Bd

60S ribosomal protein L29

Chain Bu

60S ribosomal protein L5, putative