IL_8OVE_168

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAUG*CUC

Length

7 nucleotides

Bulged bases

8OVE|1|BA|A|1569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_168 not in the Motif Atlas

Homologous match to IL_8C3A_064

Geometric discrepancy: 0.4516

The information below is about IL_8C3A_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8OVE|1|BA|G|1568
8OVE|1|BA|A|1569
8OVE|1|BA|U|1570
8OVE|1|BA|G|1571
*
8OVE|1|BA|C|1580
8OVE|1|BA|U|1581
8OVE|1|BA|C|1582

Current chains

Chain BA

LUS_alpha rRNA

Nearby chains

Chain BC

5.8S ribosomal RNA; 5.8S rRNA

Chain Bc

60S ribosomal protein L28, putative

Chain Bi

60S ribosomal protein L32, putative