IL_8OVE_171
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GCCAAC*GUAC
- Length
- 10 nucleotides
- Bulged bases
- 8OVE|1|BA|U|1702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_171 not in the Motif Atlas
- Homologous match to IL_8C3A_066
- Geometric discrepancy: 0.1194
- The information below is about IL_8C3A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93630.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
8OVE|1|BA|G|1688
8OVE|1|BA|C|1689
8OVE|1|BA|C|1690
8OVE|1|BA|A|1691
8OVE|1|BA|A|1692
8OVE|1|BA|C|1693
*
8OVE|1|BA|G|1701
8OVE|1|BA|U|1702
8OVE|1|BA|A|1703
8OVE|1|BA|C|1704
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BR
- 60S ribosomal protein L17, putative
- Chain BT
- 60S ribosomal protein L19, putative
- Chain Bq
- 60S ribosomal protein L39, putative
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