IL_8OVE_176
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGCAUG*CUGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_176 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.2287
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
8OVE|1|BA|U|1858
8OVE|1|BA|G|1859
8OVE|1|BA|C|1860
8OVE|1|BA|A|1861
8OVE|1|BA|U|1862
8OVE|1|BA|G|1863
*
8OVE|1|BB|C|7
8OVE|1|BB|U|8
8OVE|1|BB|G|9
8OVE|1|BB|C|10
8OVE|1|BB|A|11
8OVE|1|BB|G|12
Current chains
- Chain BA
- LUS_alpha rRNA
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BE
- SrRNA 1
- Chain BX
- 60S ribosomal protein L23a
- Chain Bj
- 60S ribosomal protein L34, putative
- Chain Bp
- 60S ribosomal protein L38, putative
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