IL_8OVE_183
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 8OVE|1|BB|G|599
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_183 not in the Motif Atlas
- Geometric match to IL_4V9F_062
- Geometric discrepancy: 0.1056
- The information below is about IL_4V9F_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 11
Unit IDs
8OVE|1|BB|A|85
8OVE|1|BB|G|86
8OVE|1|BB|U|87
8OVE|1|BB|C|88
8OVE|1|BB|G|89
8OVE|1|BB|G|90
*
8OVE|1|BB|C|597
8OVE|1|BB|U|598
8OVE|1|BB|G|599
8OVE|1|BB|U|600
Current chains
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BW
- 60S ribosomal protein L23, putative
- Chain Bf
- Ribosomal protein L3, mitochondrial, putative
Coloring options: