IL_8OVE_185
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GCU*AAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_185 not in the Motif Atlas
- Homologous match to IL_8C3A_085
- Geometric discrepancy: 0.0747
- The information below is about IL_8C3A_085
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8OVE|1|BB|G|124
8OVE|1|BB|C|125
8OVE|1|BB|U|126
*
8OVE|1|BB|A|372
8OVE|1|BB|A|373
8OVE|1|BB|C|374
Current chains
- Chain BB
- LSUb rRNA
Nearby chains
- Chain A5
- 40S ribosomal protein S8
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BG
- Large subunit ribosomal RNA; LSU rRNA
- Chain BH
- SrRNA 4
- Chain BT
- 60S ribosomal protein L19, putative
- Chain BV
- 60S ribosomal protein L22, putative
Coloring options: