IL_8OVE_188

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AUC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_188 not in the Motif Atlas

Geometric match to IL_5TBW_047

Geometric discrepancy: 0.1674

The information below is about IL_5TBW_047

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8OVE|1|BB|A|426
8OVE|1|BB|U|427
8OVE|1|BB|C|428
*
8OVE|1|BB|G|434
8OVE|1|BB|G|435
8OVE|1|BB|U|436

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BQ

Ribosomal protein L15

Chain Be

60S ribosomal protein L2, putative