IL_8OVE_190

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

8OVE|1|BB|C|461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_190 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.0789

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8OVE|1|BB|C|460
8OVE|1|BB|C|461
8OVE|1|BB|A|462
8OVE|1|BB|G|463
*
8OVE|1|BB|C|509
8OVE|1|BB|G|510

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain Be

60S ribosomal protein L2, putative