IL_8OVE_192

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

8OVE|1|BB|U|469

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_192 not in the Motif Atlas

Geometric match to IL_4WF9_030

Geometric discrepancy: 0.2525

The information below is about IL_4WF9_030

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

8OVE|1|BB|C|468
8OVE|1|BB|U|469
8OVE|1|BB|G|470
*
8OVE|1|BB|C|501
8OVE|1|BB|G|502

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AB

E-SITE TRNA

Chain Be

60S ribosomal protein L2, putative