IL_8OVE_222
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUG*UUUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_222 not in the Motif Atlas
- Geometric match to IL_4V9F_084
- Geometric discrepancy: 0.1832
- The information below is about IL_4V9F_084
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_36931.3
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 26
Unit IDs
8OVE|1|BB|G|1282
8OVE|1|BB|U|1283
8OVE|1|BB|G|1284
*
8OVE|1|BB|U|1312
8OVE|1|BB|U|1313
8OVE|1|BB|U|1314
8OVE|1|BB|U|1315
8OVE|1|BB|U|1316
Current chains
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BK
- 60S ribosomal protein L10, putative
Coloring options: