IL_8OVE_223

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_223 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1105

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8OVE|1|BB|C|1289
8OVE|1|BB|C|1290
8OVE|1|BB|A|1291
8OVE|1|BB|A|1292
8OVE|1|BB|G|1293
*
8OVE|1|BB|C|1303
8OVE|1|BB|G|1304
8OVE|1|BB|A|1305
8OVE|1|BB|C|1306
8OVE|1|BB|G|1307

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BK

60S ribosomal protein L10, putative

Chain Bs

Ubiquitin-60S ribosomal protein L40