IL_8OVE_228

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_228 not in the Motif Atlas

Geometric match to IL_1Z7F_002

Geometric discrepancy: 0.0906

The information below is about IL_1Z7F_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8OVE|1|BB|G|1349
8OVE|1|BB|C|1350
8OVE|1|BB|C|1351
*
8OVE|1|BB|G|1358
8OVE|1|BB|A|1359
8OVE|1|BB|C|1360

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain BG

Large subunit ribosomal RNA; LSU rRNA

Chain Bs

Ubiquitin-60S ribosomal protein L40

Chain By

60S ribosomal protein L9, putative