IL_8OVE_252

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

8OVE|1|BG|G|174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_252 not in the Motif Atlas

Geometric match to IL_2IZN_001

Geometric discrepancy: 0.3737

The information below is about IL_2IZN_001

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

8OVE|1|BG|C|30
8OVE|1|BG|G|31
*
8OVE|1|BG|C|173
8OVE|1|BG|G|174
8OVE|1|BG|G|175

Current chains

Chain BG

SrRNA 2

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BO

60S ribosomal protein L13a, putative

Chain Bf

Ribosomal protein L3, mitochondrial, putative