IL_8OVE_271
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CG*CA(OMG)
- Length
- 5 nucleotides
- Bulged bases
- 8OVE|1|AA|A|1894
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OVE_271 not in the Motif Atlas
- Homologous match to IL_8C3A_458
- Geometric discrepancy: 0.1536
- The information below is about IL_8C3A_458
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 112
Unit IDs
8OVE|1|AA|C|1685
8OVE|1|AA|G|1686
*
8OVE|1|AA|C|1893
8OVE|1|AA|A|1894
8OVE|1|AA|OMG|1895
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A8
- Putative ribosomal protein S29
- Chain AK
- 40S ribosomal protein S16, putative
- Chain AP
- 40S ribosomal protein S2, putative
- Chain AQ
- Ribosomal protein S10
- Chain AX
- 40S ribosomal protein S3, putative
Coloring options: