IL_8OVE_289

3D structure

PDB id

8OVE (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAA*(OMU)ACC

Length

7 nucleotides

Bulged bases

8OVE|1|BB|A|661, 8OVE|1|BB|C|1437

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OVE_289 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.088

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8OVE|1|BB|G|660
8OVE|1|BB|A|661
8OVE|1|BB|A|662
*
8OVE|1|BB|OMU|1435
8OVE|1|BB|A|1436
8OVE|1|BB|C|1437
8OVE|1|BB|C|1438

Current chains

Chain BB

LSUb rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BR

60S ribosomal protein L17, putative

Chain Bf

Ribosomal protein L3, mitochondrial, putative