IL_8OZ0_004
3D structure
- PDB id
- 8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translation initiation complex with eIF4F and eIF4A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAAA*UGA(OMC)G
- Length
- 9 nucleotides
- Bulged bases
- 8OZ0|1|W|A|516
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OZ0_004 not in the Motif Atlas
- Geometric match to IL_4WF9_016
- Geometric discrepancy: 0.3236
- The information below is about IL_4WF9_016
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
8OZ0|1|W|C|37
8OZ0|1|W|A|38
8OZ0|1|W|A|39
8OZ0|1|W|A|40
*
8OZ0|1|W|U|514
8OZ0|1|W|G|515
8OZ0|1|W|A|516
8OZ0|1|W|OMC|517
8OZ0|1|W|G|518
Current chains
- Chain W
- 18S rRNA
Nearby chains
- Chain Y
- 40S ribosomal protein S4, X isoform
- Chain Z
- 40S ribosomal protein S9
Coloring options: