IL_8OZ0_011

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

U(OMU)CC(PSU)U(OMU)G*CCAUUCGA

Length

16 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OZ0|1|W|U|115
8OZ0|1|W|OMU|116
8OZ0|1|W|C|117
8OZ0|1|W|C|118
8OZ0|1|W|PSU|119
8OZ0|1|W|U|120
8OZ0|1|W|OMU|121
8OZ0|1|W|G|122
*
8OZ0|1|W|C|341
8OZ0|1|W|C|342
8OZ0|1|W|A|343
8OZ0|1|W|U|344
8OZ0|1|W|U|345
8OZ0|1|W|C|346
8OZ0|1|W|G|347
8OZ0|1|W|A|348

Current chains

Chain W

18S rRNA

Nearby chains

Chain Y

40S ribosomal protein S4, X isoform

Chain d

40S ribosomal protein S8