IL_8OZ0_020

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

8OZ0|1|W|U|368, 8OZ0|1|W|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OZ0_020 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2672

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8OZ0|1|W|U|366
8OZ0|1|W|U|367
8OZ0|1|W|U|368
8OZ0|1|W|C|369
8OZ0|1|W|G|370
8OZ0|1|W|A|371
*
8OZ0|1|W|U|393
8OZ0|1|W|G|394

Current chains

Chain W

18S rRNA

Nearby chains

Chain J

Eukaryotic translation initiation factor 3 subunit C

Chain X

40S ribosomal protein S11

Chain d

40S ribosomal protein S8