IL_8OZ0_028

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAG*CCUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OZ0_028 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.3155

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

8OZ0|1|W|C|532
8OZ0|1|W|A|533
8OZ0|1|W|G|534
*
8OZ0|1|W|C|549
8OZ0|1|W|C|550
8OZ0|1|W|U|551
8OZ0|1|W|G|552

Current chains

Chain W

18S rRNA

Nearby chains

Chain I

Eukaryotic translation initiation factor 3 subunit B

Chain Z

40S ribosomal protein S9

Chain b

40S ribosomal protein S30