IL_8OZ0_030

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OZ0_030 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.2645

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8OZ0|1|W|U|566
8OZ0|1|W|C|567
8OZ0|1|W|C|568
8OZ0|1|W|A|569
*
8OZ0|1|W|U|581
8OZ0|1|W|U|582
8OZ0|1|W|A|583
8OZ0|1|W|A|584

Current chains

Chain W

18S rRNA

Nearby chains

Chain Z

40S ribosomal protein S9

Chain e

40S ribosomal protein S24