IL_8OZ0_089

3D structure

PDB id

8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translation initiation complex with eIF4F and eIF4A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OZ0_089 not in the Motif Atlas

Homologous match to IL_4V88_470

Geometric discrepancy: 0.1416

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8OZ0|1|W|U|1729
8OZ0|1|W|U|1730
8OZ0|1|W|A|1731
*
8OZ0|1|W|U|1803
8OZ0|1|W|U|1804
8OZ0|1|W|G|1805

Current chains

Chain W

18S rRNA

Nearby chains

Chain J

Eukaryotic translation initiation factor 3 subunit C

Chain d

40S ribosomal protein S8