IL_8OZ0_101
3D structure
- PDB id
- 8OZ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translation initiation complex with eIF4F and eIF4A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAAAAA(5MU)U*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OZ0_101 not in the Motif Atlas
- Homologous match to IL_8CRE_430
- Geometric discrepancy: 0.4255
- The information below is about IL_8CRE_430
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.2
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8OZ0|1|W|G|807
8OZ0|1|W|A|808
8OZ0|1|W|A|809
8OZ0|1|W|A|810
8OZ0|1|W|A|811
8OZ0|1|W|A|812
8OZ0|1|W|A|813
8OZ0|1|W|5MU|814
8OZ0|1|W|U|815
*
8OZ0|1|W|A|849
8OZ0|1|W|C|850
8OZ0|1|W|C|851
8OZ0|1|W|G|852
8OZ0|1|W|C|853
8OZ0|1|W|A|854
8OZ0|1|W|G|855
8OZ0|1|W|C|856
Current chains
- Chain W
- 18S rRNA
Nearby chains
- Chain X
- 40S ribosomal protein S11
- Chain Y
- 40S ribosomal protein S4, X isoform
- Chain Z
- 40S ribosomal protein S9
- Chain c
- 40S ribosomal protein S15a
Coloring options: