IL_8P03_031

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P03_031 not in the Motif Atlas

Geometric match to IL_6JDV_001

Geometric discrepancy: 0.2232

The information below is about IL_6JDV_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8P03|1|2|U|556
8P03|1|2|C|557
8P03|1|2|C|558
8P03|1|2|A|559
*
8P03|1|2|U|571
8P03|1|2|U|572
8P03|1|2|A|573
8P03|1|2|A|574

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S9

Chain a

40S ribosomal protein S24

Chain k

ATP binding cassette subfamily E member 1