IL_8P03_032

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P03_032 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1133

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

8P03|1|2|A|589
8P03|1|2|G|590
8P03|1|2|G|591
8P03|1|2|G|592
8P03|1|2|C|593
8P03|1|2|A|594
8P03|1|2|A|595
8P03|1|2|G|596
*
8P03|1|2|C|626
8P03|1|2|U|627

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S2

Chain L

40S ribosomal protein S9

Chain i

40S ribosomal protein S30