IL_8P03_054

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8P03|1|2|G|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P03_054 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1423

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8P03|1|2|G|948
8P03|1|2|C|949
8P03|1|2|U|950
8P03|1|2|A|951
8P03|1|2|G|952
*
8P03|1|2|C|963
8P03|1|2|U|964
8P03|1|2|U|965
8P03|1|2|G|966
8P03|1|2|G|967
8P03|1|2|A|968
8P03|1|2|C|969
8P03|1|2|C|970

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

ribosomal protein eS1

Chain Q

40S ribosomal protein uS11