IL_8P03_061
3D structure
- PDB id
- 8P03 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with m6A mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P03_061 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.0841
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8P03|1|2|G|1164
8P03|1|2|G|1165
8P03|1|2|A|1166
8P03|1|2|G|1167
8P03|1|2|U|1168
8P03|1|2|A|1169
8P03|1|2|U|1170
8P03|1|2|G|1171
*
8P03|1|2|U|1182
8P03|1|2|G|1183
8P03|1|2|A|1184
8P03|1|2|A|1185
8P03|1|2|A|1186
8P03|1|2|C|1187
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain Z
- 40S ribosomal protein S23
- Chain l
- 60S ribosomal protein L41
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