IL_8P03_083

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CCCC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P03_083 not in the Motif Atlas

Geometric match to IL_8DP3_001

Geometric discrepancy: 0.2866

The information below is about IL_8DP3_001

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8P03|1|2|C|1412
8P03|1|2|C|1413
8P03|1|2|C|1414
8P03|1|2|C|1415
*
8P03|1|2|G|1424
8P03|1|2|G|1425

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein uS9

Chain V

40S ribosomal protein eS19