IL_8P09_004

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

8P09|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_004 not in the Motif Atlas

Homologous match to IL_4V88_387

Geometric discrepancy: 0.1177

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8P09|1|2|G|41
8P09|1|2|A|42
8P09|1|2|U|43
8P09|1|2|U|44
8P09|1|2|A|45
8P09|1|2|A|46
8P09|1|2|G|47
*
8P09|1|2|C|469
8P09|1|2|G|470
8P09|1|2|C|471

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S9

Chain Z

40S ribosomal protein S23

Chain k

ATP binding cassette subfamily E member 1