IL_8P09_011

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_011 not in the Motif Atlas

Homologous match to IL_8C3A_401

Geometric discrepancy: 0.1563

The information below is about IL_8C3A_401

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02934.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8P09|1|2|U|116
8P09|1|2|C|117
8P09|1|2|C|118
8P09|1|2|U|119
8P09|1|2|U|120
8P09|1|2|U|121
*
8P09|1|2|A|333
8P09|1|2|U|334
8P09|1|2|U|335
8P09|1|2|C|336
8P09|1|2|G|337

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain K

40S ribosomal protein S8