IL_8P09_012

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8P09|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_012 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.1111

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8P09|1|2|G|145
8P09|1|2|G|146
8P09|1|2|A|147
8P09|1|2|U|148
8P09|1|2|A|149
8P09|1|2|A|150
8P09|1|2|C|151
*
8P09|1|2|G|167
8P09|1|2|C|168
8P09|1|2|U|169
8P09|1|2|A|170
8P09|1|2|A|171
8P09|1|2|U|172
8P09|1|2|A|173
8P09|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S6

Chain a

40S ribosomal protein S24