3D structure

PDB id
8P09 (explore in PDB, NAKB, or RNA 3D Hub)
Description
48S late-stage initiation complex with non methylated mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGG*CGAUUC
Length
9 nucleotides
Bulged bases
8P09|1|2|U|418
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P09_022 not in the Motif Atlas
Homologous match to IL_4V88_404
Geometric discrepancy: 0.1189
The information below is about IL_4V88_404
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_11347.3
Basepair signature
cWW-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

8P09|1|2|G|401
8P09|1|2|G|402
8P09|1|2|G|403
*
8P09|1|2|C|414
8P09|1|2|G|415
8P09|1|2|A|416
8P09|1|2|U|417
8P09|1|2|U|418
8P09|1|2|C|419

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain G
40S ribosomal protein S4
Chain L
40S ribosomal protein S9
Chain Z
40S ribosomal protein S23

Coloring options:


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