IL_8P09_026
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCACU*AG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P09_026 not in the Motif Atlas
- Homologous match to IL_8C3A_416
- Geometric discrepancy: 0.1181
- The information below is about IL_8C3A_416
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_03109.1
- Basepair signature
- cWW-cSH-cWS-tWH-cWW
- Number of instances in this motif group
- 5
Unit IDs
8P09|1|2|C|481
8P09|1|2|C|482
8P09|1|2|A|483
8P09|1|2|C|484
8P09|1|2|U|485
*
8P09|1|2|A|498
8P09|1|2|G|499
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S4
- Chain L
- 40S ribosomal protein S9
- Chain a
- 40S ribosomal protein S24
- Chain k
- ATP binding cassette subfamily E member 1
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