IL_8P09_028

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUA*UAAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_028 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.3511

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8P09|1|2|A|519
8P09|1|2|U|520
8P09|1|2|A|521
*
8P09|1|2|U|543
8P09|1|2|A|544
8P09|1|2|A|545
8P09|1|2|U|546

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain i

40S ribosomal protein S30