IL_8P09_045
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P09_045 not in the Motif Atlas
- Geometric match to IL_4V88_425
- Geometric discrepancy: 0.2673
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8P09|1|2|G|803
8P09|1|2|A|804
8P09|1|2|A|805
8P09|1|2|A|806
8P09|1|2|A|807
8P09|1|2|A|808
8P09|1|2|A|809
8P09|1|2|U|810
8P09|1|2|U|811
*
8P09|1|2|A|845
8P09|1|2|C|846
8P09|1|2|C|847
8P09|1|2|G|848
8P09|1|2|C|849
8P09|1|2|A|850
8P09|1|2|G|851
8P09|1|2|C|852
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S4
- Chain L
- 40S ribosomal protein S9
- Chain N
- 40S ribosomal protein S11
- Chain Y
- Ribosomal protein S15a
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