IL_8P09_046

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CCAU

Length

6 nucleotides

Bulged bases

8P09|1|2|A|909

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_046 not in the Motif Atlas

Geometric match to IL_5J7L_044

Geometric discrepancy: 0.3964

The information below is about IL_5J7L_044

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8P09|1|2|G|869
8P09|1|2|G|870
*
8P09|1|2|C|907
8P09|1|2|C|908
8P09|1|2|A|909
8P09|1|2|U|910

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

ribosomal protein eS7

Chain N

40S ribosomal protein S11