IL_8P09_048

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCGC*GAGG

Length

8 nucleotides

Bulged bases

8P09|1|2|C|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_048 not in the Motif Atlas

Geometric match to IL_9AXU_077

Geometric discrepancy: 0.3647

The information below is about IL_9AXU_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8P09|1|2|C|872
8P09|1|2|C|873
8P09|1|2|G|874
8P09|1|2|C|875
*
8P09|1|2|G|903
8P09|1|2|A|904
8P09|1|2|G|905
8P09|1|2|G|906

Current chains

Chain 2

18S ribosomal RNA

Nearby chains