IL_8P09_056

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

8P09|1|2|G|966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P09_056 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1655

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

8P09|1|2|G|948
8P09|1|2|C|949
8P09|1|2|U|950
8P09|1|2|A|951
8P09|1|2|G|952
*
8P09|1|2|C|963
8P09|1|2|U|964
8P09|1|2|U|965
8P09|1|2|G|966
8P09|1|2|G|967
8P09|1|2|A|968
8P09|1|2|C|969
8P09|1|2|C|970

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

ribosomal protein eS1

Chain Q

40S ribosomal protein uS11