IL_8P09_060
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P09_060 not in the Motif Atlas
- Homologous match to IL_8C3A_444
- Geometric discrepancy: 0.0875
- The information below is about IL_8C3A_444
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
8P09|1|2|C|1094
8P09|1|2|G|1095
8P09|1|2|A|1096
8P09|1|2|U|1097
*
8P09|1|2|G|1127
8P09|1|2|C|1128
8P09|1|2|A|1129
8P09|1|2|G|1130
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- 40S ribosomal protein SA
- Chain D
- ribosomal protein eS1
- Chain P
- ribosomal protein uS15
- Chain b
- 40S ribosomal protein S26
- Chain c
- 40S ribosomal protein S27
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